IL_8V84_100

3D structure

PDB id

8V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CG*UUG

Length

5 nucleotides

Bulged bases

8V84|1|1|U|3382

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V84_100 not in the Motif Atlas

Homologous match to IL_8CRE_137

Geometric discrepancy: 0.4062

The information below is about IL_8CRE_137

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8V84|1|1|C|3324
8V84|1|1|G|3325
*
8V84|1|1|U|3381
8V84|1|1|U|3382
8V84|1|1|G|3383

Current chains

Chain 1

Saccharomyces cerevisiae 25S ribosomal RNA

Nearby chains

Chain B

Large ribosomal subunit protein uL3

Chain Z

Ribosome biogenesis protein SSF1