IL_8V87_002
3D structure
- PDB id
- 8V87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- AUC*GU
- Length
- 5 nucleotides
- Bulged bases
- 8V87|1|1|U|14
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8V87_002 not in the Motif Atlas
- Homologous match to IL_8C3A_003
- Geometric discrepancy: 0.0929
- The information below is about IL_8C3A_003
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_83039.19
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 123
Unit IDs
8V87|1|1|A|13
8V87|1|1|U|14
8V87|1|1|C|15
*
8V87|1|2|G|144
8V87|1|2|U|145
Current chains
- Chain 1
- 25S ribosomal RNA
- Chain 2
- 5.8S ribosomal RNA
Nearby chains
- Chain G
- Large ribosomal subunit protein eL8A
- Chain N
- Large ribosomal subunit protein eL15A
- Chain X
- 60S ribosomal protein L25
- Chain n
- Pescadillo homolog
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