IL_8V87_020

3D structure

PDB id

8V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GUC*GCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V87_020 not in the Motif Atlas

Geometric match to IL_7A0S_020

Geometric discrepancy: 0.176

The information below is about IL_7A0S_020

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

8V87|1|1|G|668
8V87|1|1|U|669
8V87|1|1|C|670
*
8V87|1|1|G|792
8V87|1|1|C|793
8V87|1|1|U|794

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L4-A

Chain L

60S ribosomal protein L13-A

Chain Q

60S ribosomal protein L18-A