IL_8V87_028
3D structure
- PDB id
- 8V87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- GGUU*AUC
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8V87_028 not in the Motif Atlas
- Geometric match to IL_4V9F_003
- Geometric discrepancy: 0.2737
- The information below is about IL_4V9F_003
- Detailed Annotation
- Major groove platform with extra cWW
- Broad Annotation
- Major groove platform
- Motif group
- IL_36931.2
- Basepair signature
- cWW-cSH-cWW-cWW
- Number of instances in this motif group
- 24
Unit IDs
8V87|1|1|G|869
8V87|1|1|G|870
8V87|1|1|U|871
8V87|1|1|U|872
*
8V87|1|1|A|888
8V87|1|1|U|889
8V87|1|1|C|890
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 3
- ATP-dependent RNA helicase DBP10
- Chain 8
- Nucleolar complex protein 2
- Chain I
- Nucleolar complex-associated protein 3
- Chain l
- 60S ribosome subunit biogenesis protein NIP7
- Chain w
- 27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase
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