IL_8V87_033

3D structure

PDB id

8V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

AUU*ACU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V87_033 not in the Motif Atlas

Geometric match to IL_4E59_001

Geometric discrepancy: 0.0909

The information below is about IL_4E59_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

8V87|1|1|A|1120
8V87|1|1|U|1121
8V87|1|1|U|1122
*
8V87|1|1|A|1136
8V87|1|1|C|1137
8V87|1|1|U|1138

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain F

60S ribosomal protein L7-A

Chain J

rRNA-processing protein EBP2

Chain s

Nuclear GTP-binding protein NUG1