IL_8V87_039
3D structure
- PDB id
- 8V87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- GACACAAAA*UGAAAAUGGAUGGCGC
- Length
- 25 nucleotides
- Bulged bases
- 8V87|1|1|C|1196, 8V87|1|1|U|1305
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8V87|1|1|G|1194
8V87|1|1|A|1195
8V87|1|1|C|1196
8V87|1|1|A|1200
8V87|1|1|C|1201
8V87|1|1|A|1202
8V87|1|1|A|1203
8V87|1|1|A|1204
8V87|1|1|A|1205
*
8V87|1|1|U|1299
8V87|1|1|G|1300
8V87|1|1|A|1301
8V87|1|1|A|1302
8V87|1|1|A|1303
8V87|1|1|A|1304
8V87|1|1|U|1305
8V87|1|1|G|1306
8V87|1|1|G|1307
8V87|1|1|A|1308
8V87|1|1|U|1309
8V87|1|1|G|1310
8V87|1|1|G|1311
8V87|1|1|C|1312
8V87|1|1|G|1313
8V87|1|1|C|1314
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain O
- Large ribosomal subunit protein uL13A
- Chain S
- Large ribosomal subunit protein eL20A
- Chain b
- Nucleolar GTP-binding protein 1
- Chain f
- 60S ribosomal protein L33-A
- Chain r
- Ribosome biogenesis protein NSA2
- Chain s
- Nuclear GTP-binding protein NUG1
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