IL_8V87_040

3D structure

PDB id

8V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

8V87|1|1|U|1208

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V87_040 not in the Motif Atlas

Geometric match to IL_7KVT_002

Geometric discrepancy: 0.1799

The information below is about IL_7KVT_002

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

8V87|1|1|G|1207
8V87|1|1|U|1208
8V87|1|1|G|1209
*
8V87|1|1|C|1296
8V87|1|1|C|1297

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain H

Large ribosomal subunit protein uL6A

Chain S

Large ribosomal subunit protein eL20A

Chain W

Ribosome assembly factor MRT4

Chain r

Ribosome biogenesis protein NSA2