IL_8V87_043

3D structure

PDB id

8V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

8V87|1|1|A|1263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V87_043 not in the Motif Atlas

Geometric match to IL_5D8H_003

Geometric discrepancy: 0.1078

The information below is about IL_5D8H_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_36931.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

23

Unit IDs

8V87|1|1|G|1262
8V87|1|1|A|1263
8V87|1|1|G|1264
8V87|1|1|U|1265
8V87|1|1|G|1266
*
8V87|1|1|C|1275
8V87|1|1|U|1276
8V87|1|1|C|1277

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 3

ATP-dependent RNA helicase DBP10

Chain W

Ribosome assembly factor MRT4

Chain r

Ribosome biogenesis protein NSA2