IL_8V87_053

3D structure

PDB id

8V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GG*UUC

Length

5 nucleotides

Bulged bases

8V87|1|1|U|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V87_053 not in the Motif Atlas

Geometric match to IL_2R8S_004

Geometric discrepancy: 0.3357

The information below is about IL_2R8S_004

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

8V87|1|1|G|1623
8V87|1|1|G|1624
*
8V87|1|1|U|1820
8V87|1|1|U|1821
8V87|1|1|C|1822

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain g

60S ribosomal protein L34-A

Chain m

Ribosome biogenesis protein ERB1

Chain n

Pescadillo homolog