IL_8V87_063

3D structure

PDB id

8V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

AUA*UAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V87_063 not in the Motif Atlas

Geometric match to IL_1YZ9_001

Geometric discrepancy: 0.1576

The information below is about IL_1YZ9_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8V87|1|1|A|1893
8V87|1|1|U|1894
8V87|1|1|A|1895
*
8V87|1|1|U|2340
8V87|1|1|A|2341
8V87|1|1|U|2342

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 3

ATP-dependent RNA helicase DBP10