IL_8V87_065

3D structure

PDB id

8V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

AA*UGU

Length

5 nucleotides

Bulged bases

8V87|1|1|G|2335

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V87_065 not in the Motif Atlas

Geometric match to IL_8C3A_048

Geometric discrepancy: 0.2492

The information below is about IL_8C3A_048

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

8V87|1|1|A|1900
8V87|1|1|A|1901
*
8V87|1|1|U|2334
8V87|1|1|G|2335
8V87|1|1|U|2336

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 3

ATP-dependent RNA helicase DBP10

Chain V

60S ribosomal protein L23-A