IL_8V87_071

3D structure

PDB id

8V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

8V87|1|1|G|2606

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V87_071 not in the Motif Atlas

Geometric match to IL_5J7L_325

Geometric discrepancy: 0.1681

The information below is about IL_5J7L_325

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_85599.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8V87|1|1|U|2423
8V87|1|1|A|2424
8V87|1|1|G|2425
*
8V87|1|1|U|2604
8V87|1|1|G|2605
8V87|1|1|G|2606
8V87|1|1|G|2607

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 7

60S ribosomal subunit assembly/export protein LOC1

Chain l

60S ribosome subunit biogenesis protein NIP7

Chain q

25S rRNA (cytosine(2870)-C(5))-methyltransferase