IL_8V87_073

3D structure

PDB id

8V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GUGAAG*CUUUAC

Length

12 nucleotides

Bulged bases

8V87|1|1|G|2437

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8V87|1|1|G|2435
8V87|1|1|U|2436
8V87|1|1|G|2437
8V87|1|1|A|2438
8V87|1|1|A|2439
8V87|1|1|G|2440
*
8V87|1|1|C|2507
8V87|1|1|U|2508
8V87|1|1|U|2509
8V87|1|1|U|2510
8V87|1|1|A|2511
8V87|1|1|C|2512

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 8

Nucleolar complex protein 2

Chain q

25S rRNA (cytosine(2870)-C(5))-methyltransferase