IL_8V87_074

3D structure

PDB id

8V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GAC*GUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V87_074 not in the Motif Atlas

Geometric match to IL_7RQB_030

Geometric discrepancy: 0.2624

The information below is about IL_7RQB_030

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.4

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

8V87|1|1|G|2442
8V87|1|1|A|2443
8V87|1|1|C|2444
*
8V87|1|1|G|2503
8V87|1|1|U|2504
8V87|1|1|U|2505

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain q

25S rRNA (cytosine(2870)-C(5))-methyltransferase