IL_8V87_079
3D structure
- PDB id
- 8V87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- UCAAG*CGACA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8V87_079 not in the Motif Atlas
- Geometric match to IL_1U6B_002
- Geometric discrepancy: 0.3371
- The information below is about IL_1U6B_002
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_87767.1
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
8V87|1|1|U|2835
8V87|1|1|C|2836
8V87|1|1|A|2837
8V87|1|1|A|2838
8V87|1|1|G|2839
*
8V87|1|1|C|2849
8V87|1|1|G|2850
8V87|1|1|A|2851
8V87|1|1|C|2852
8V87|1|1|A|2853
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain J
- rRNA-processing protein EBP2
- Chain b
- Nucleolar GTP-binding protein 1
- Chain r
- Ribosome biogenesis protein NSA2
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