IL_8V87_080

3D structure

PDB id

8V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CGGC*GCUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V87_080 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.1874

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8V87|1|1|C|2876
8V87|1|1|G|2877
8V87|1|1|G|2878
8V87|1|1|C|2879
*
8V87|1|1|G|2947
8V87|1|1|C|2948
8V87|1|1|U|2949
8V87|1|1|G|2950

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain b

Nucleolar GTP-binding protein 1