IL_8V87_082

3D structure

PDB id

8V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UA*UAAG

Length

6 nucleotides

Bulged bases

8V87|1|1|A|2911

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V87_082 not in the Motif Atlas

Geometric match to IL_4V9F_089

Geometric discrepancy: 0.1427

The information below is about IL_4V9F_089

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_94991.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

17

Unit IDs

8V87|1|1|U|2891
8V87|1|1|A|2892
*
8V87|1|1|U|2909
8V87|1|1|A|2910
8V87|1|1|A|2911
8V87|1|1|G|2912

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain H

Large ribosomal subunit protein uL6A

Chain r

Ribosome biogenesis protein NSA2

Chain s

Nuclear GTP-binding protein NUG1

Chain z

UPF0642 protein YBL028C