IL_8V9J_032
3D structure
- PDB id
- 8V9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) (Structure 4)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCUACU*AAAC
- Length
- 10 nucleotides
- Bulged bases
- 8V9J|1|A|U|981
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8V9J_032 not in the Motif Atlas
- Homologous match to IL_4WF9_033
- Geometric discrepancy: 0.1422
- The information below is about IL_4WF9_033
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_16301.2
- Basepair signature
- cWW-cWS-tWH-R-L-R-cWW
- Number of instances in this motif group
- 10
Unit IDs
8V9J|1|A|G|979
8V9J|1|A|C|980
8V9J|1|A|U|981
8V9J|1|A|A|982
8V9J|1|A|C|983
8V9J|1|A|U|984
*
8V9J|1|A|A|1024
8V9J|1|A|A|1025
8V9J|1|A|A|1026
8V9J|1|A|C|1027
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain O
- 50S Ribosomal Protein L16
Coloring options: