IL_8V9J_085
3D structure
- PDB id
- 8V9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) (Structure 4)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAAAUUCCUUG*CCUG
- Length
- 16 nucleotides
- Bulged bases
- 8V9J|1|A|A|2162, 8V9J|1|A|U|2168
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8V9J_085 not in the Motif Atlas
- Geometric match to IL_7A0S_072
- Geometric discrepancy: 0.1418
- The information below is about IL_7A0S_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04332.3
- Basepair signature
- cWW-L-R-L-cWW-L-L-R-L-R-L
- Number of instances in this motif group
- 2
Unit IDs
8V9J|1|A|C|2158
8V9J|1|A|G|2159
8V9J|1|A|A|2160
8V9J|1|A|A|2161
8V9J|1|A|A|2162
8V9J|1|A|U|2163
8V9J|1|A|U|2164
8V9J|1|A|C|2165
8V9J|1|A|C|2166
8V9J|1|A|U|2167
8V9J|1|A|U|2168
8V9J|1|A|G|2169
*
8V9J|1|A|C|2185
8V9J|1|A|C|2186
8V9J|1|A|U|2187
8V9J|1|A|G|2188
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain u
- 30S Ribosomal Protein S22
- Chain z
- Ribosome hibernation factor Balon (MSMEG_1130)
Coloring options: