IL_8V9J_099

3D structure

PDB id

8V9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) (Structure 4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUC*GG

Length

5 nucleotides

Bulged bases

8V9J|1|A|U|2626

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V9J_099 not in the Motif Atlas

Geometric match to IL_3WBM_001

Geometric discrepancy: 0.3122

The information below is about IL_3WBM_001

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

170

Unit IDs

8V9J|1|A|C|2625
8V9J|1|A|U|2626
8V9J|1|A|C|2627
*
8V9J|1|A|G|2638
8V9J|1|A|G|2639

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 5

50S Ribosomal Protein L33

Chain N

50S ribosomal protein L15