IL_8V9J_144

3D structure

PDB id

8V9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) (Structure 4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAUGACG*UGUAAAC

Length

15 nucleotides

Bulged bases

8V9J|1|a|U|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V9J_144 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1565

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

8V9J|1|a|G|409
8V9J|1|a|G|410
8V9J|1|a|A|411
8V9J|1|a|U|412
8V9J|1|a|G|413
8V9J|1|a|A|414
8V9J|1|a|C|415
8V9J|1|a|G|416
*
8V9J|1|a|U|427
8V9J|1|a|G|428
8V9J|1|a|U|429
8V9J|1|a|A|430
8V9J|1|a|A|431
8V9J|1|a|A|432
8V9J|1|a|C|433

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S4