IL_8V9L_006

3D structure

PDB id

8V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAAGUG*CUCAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V9L_006 not in the Motif Atlas

Geometric match to IL_4V9F_006

Geometric discrepancy: 0.1047

The information below is about IL_4V9F_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

8V9L|1|A|G|187
8V9L|1|A|G|188
8V9L|1|A|A|189
8V9L|1|A|A|190
8V9L|1|A|G|191
8V9L|1|A|U|192
8V9L|1|A|G|193
*
8V9L|1|A|C|200
8V9L|1|A|U|201
8V9L|1|A|C|202
8V9L|1|A|A|203
8V9L|1|A|G|204
8V9L|1|A|U|205
8V9L|1|A|A|206
8V9L|1|A|C|207

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein L35

Chain N

50S ribosomal protein L15

Chain Z

Large ribosomal subunit protein bL28