IL_8V9L_007

3D structure

PDB id

8V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V9L_007 not in the Motif Atlas

Homologous match to IL_7RQB_007

Geometric discrepancy: 0.1133

The information below is about IL_7RQB_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8V9L|1|A|U|239
8V9L|1|A|G|240
8V9L|1|A|A|241
8V9L|1|A|G|242
8V9L|1|A|U|243
8V9L|1|A|A|244
8V9L|1|A|G|245
*
8V9L|1|A|C|253
8V9L|1|A|G|254
8V9L|1|A|A|255
8V9L|1|A|A|256
8V9L|1|A|A|257
8V9L|1|A|G|258

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein L35

Chain N

50S ribosomal protein L15