IL_8V9L_026

3D structure

PDB id

8V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

8V9L|1|A|G|891, 8V9L|1|A|A|903, 8V9L|1|A|A|904

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V9L_026 not in the Motif Atlas

Geometric match to IL_7RQB_023

Geometric discrepancy: 0.0755

The information below is about IL_7RQB_023

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_90991.6

Basepair signature

cWW-cWW

Number of instances in this motif group

7

Unit IDs

8V9L|1|A|G|890
8V9L|1|A|G|891
8V9L|1|A|G|892
*
8V9L|1|A|C|902
8V9L|1|A|A|903
8V9L|1|A|A|904
8V9L|1|A|U|905
8V9L|1|A|C|906

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L34

Chain C

50S ribosomal protein L2

Chain U

Large ribosomal subunit protein uL22