IL_8V9L_034

3D structure

PDB id

8V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCGAUG*CUGACG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V9L_034 not in the Motif Atlas

Geometric match to IL_4V88_462

Geometric discrepancy: 0.3037

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8V9L|1|A|C|991
8V9L|1|A|C|992
8V9L|1|A|G|993
8V9L|1|A|A|994
8V9L|1|A|U|995
8V9L|1|A|G|996
*
8V9L|1|A|C|1012
8V9L|1|A|U|1013
8V9L|1|A|G|1014
8V9L|1|A|A|1015
8V9L|1|A|C|1016
8V9L|1|A|G|1017

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain X

50S ribosomal protein L25