IL_8V9L_066

3D structure

PDB id

8V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGUAG*UGAGAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V9L_066 not in the Motif Atlas

Geometric match to IL_7A0S_027

Geometric discrepancy: 0.3881

The information below is about IL_7A0S_027

Detailed Annotation

5x5 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_81631.1

Basepair signature

cWW-L-R-cSH-R-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

8V9L|1|A|C|1694
8V9L|1|A|U|1695
8V9L|1|A|G|1696
8V9L|1|A|U|1697
8V9L|1|A|A|1698
8V9L|1|A|G|1699
*
8V9L|1|A|U|1735
8V9L|1|A|G|1736
8V9L|1|A|A|1737
8V9L|1|A|G|1738
8V9L|1|A|A|1739
8V9L|1|A|G|1740

Current chains

Chain A

23S Ribosomal RNA

Nearby chains