3D structure

PDB id
8V9L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
CAUGG*UGAG
Length
9 nucleotides
Bulged bases
8V9L|1|A|U|1932
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8V9L_074 not in the Motif Atlas
Geometric match to IL_6DLR_005
Geometric discrepancy: 0.2673
The information below is about IL_6DLR_005
Detailed Annotation
tWW and near cWH
Broad Annotation
tWW and near cWH
Motif group
IL_04785.1
Basepair signature
cWW-L-R-L-R-cWW
Number of instances in this motif group
2

Unit IDs

8V9L|1|A|C|1930
8V9L|1|A|A|1931
8V9L|1|A|U|1932
8V9L|1|A|G|1933
8V9L|1|A|G|1934
*
8V9L|1|A|U|1960
8V9L|1|A|G|1961
8V9L|1|A|A|1962
8V9L|1|A|G|1963

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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