IL_8V9L_078

3D structure

PDB id

8V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGCGAAG*CGAUGUAUA

Length

16 nucleotides

Bulged bases

8V9L|1|A|G|2018, 8V9L|1|A|U|2033, 8V9L|1|A|U|2037

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V9L_078 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0986

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8V9L|1|A|U|2015
8V9L|1|A|G|2016
8V9L|1|A|C|2017
8V9L|1|A|G|2018
8V9L|1|A|A|2019
8V9L|1|A|A|2020
8V9L|1|A|G|2021
*
8V9L|1|A|C|2030
8V9L|1|A|G|2031
8V9L|1|A|A|2032
8V9L|1|A|U|2033
8V9L|1|A|G|2034
8V9L|1|A|U|2035
8V9L|1|A|A|2036
8V9L|1|A|U|2037
8V9L|1|A|A|2038

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA