IL_8V9L_083

3D structure

PDB id

8V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGGACC*GAGAAU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V9L_083 not in the Motif Atlas

Geometric match to IL_5TBW_026

Geometric discrepancy: 0.2895

The information below is about IL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8V9L|1|A|A|2073
8V9L|1|A|G|2074
8V9L|1|A|G|2075
8V9L|1|A|A|2076
8V9L|1|A|C|2077
8V9L|1|A|C|2078
*
8V9L|1|A|G|2105
8V9L|1|A|A|2106
8V9L|1|A|G|2107
8V9L|1|A|A|2108
8V9L|1|A|A|2109
8V9L|1|A|U|2110

Current chains

Chain A

23S Ribosomal RNA

Nearby chains