IL_8V9L_103

3D structure

PDB id

8V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

8V9L|1|A|U|2715

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V9L_103 not in the Motif Atlas

Geometric match to IL_4WF9_092

Geometric discrepancy: 0.142

The information below is about IL_4WF9_092

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

8V9L|1|A|A|2683
8V9L|1|A|U|2684
8V9L|1|A|C|2685
*
8V9L|1|A|G|2713
8V9L|1|A|G|2714
8V9L|1|A|U|2715
8V9L|1|A|U|2716
8V9L|1|A|U|2717

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 9

50S Ribosomal Protein L27

Chain O

Large ribosomal subunit protein uL16

Chain z

Ribosome hibernation factor Balon (MSMEG_1130)