IL_8V9L_105

3D structure

PDB id

8V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V9L_105 not in the Motif Atlas

Homologous match to IL_4WF9_093

Geometric discrepancy: 0.1406

The information below is about IL_4WF9_093

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

8V9L|1|A|C|2690
8V9L|1|A|C|2691
8V9L|1|A|A|2692
8V9L|1|A|A|2693
8V9L|1|A|G|2694
*
8V9L|1|A|C|2704
8V9L|1|A|G|2705
8V9L|1|A|A|2706
8V9L|1|A|C|2707
8V9L|1|A|G|2708

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 8

50S ribosomal protein L36

Chain O

Large ribosomal subunit protein uL16

Chain z

Ribosome hibernation factor Balon (MSMEG_1130)