IL_8V9L_117

3D structure

PDB id

8V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAC*GCAC

Length

7 nucleotides

Bulged bases

8V9L|1|A|A|3100

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V9L_117 not in the Motif Atlas

Geometric match to IL_4V9F_097

Geometric discrepancy: 0.1868

The information below is about IL_4V9F_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

27

Unit IDs

8V9L|1|A|G|3059
8V9L|1|A|A|3060
8V9L|1|A|C|3061
*
8V9L|1|A|G|3098
8V9L|1|A|C|3099
8V9L|1|A|A|3100
8V9L|1|A|C|3101

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L17

Chain R

50S ribosomal protein L19