IL_8V9L_156

3D structure

PDB id

8V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UA*UAA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V9L_156 not in the Motif Atlas

Homologous match to IL_4LFB_028

Geometric discrepancy: 0.296

The information below is about IL_4LFB_028

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

8V9L|1|a|U|637
8V9L|1|a|A|638
*
8V9L|1|a|U|727
8V9L|1|a|A|728
8V9L|1|a|A|729

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain h

Small ribosomal subunit protein uS8

Chain o

Small ribosomal subunit protein uS15