IL_8V9L_197

3D structure

PDB id

8V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAGACUGUGAAG*UGGAGUCGUUGUUGAAAUAC

Length

33 nucleotides

Bulged bases

8V9L|1|A|U|2355, 8V9L|1|A|G|2385, 8V9L|1|A|U|2386, 8V9L|1|A|U|2387, 8V9L|1|A|U|2395

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8V9L|1|A|G|2347
8V9L|1|A|G|2348
8V9L|1|A|A|2349
8V9L|1|A|G|2350
8V9L|1|A|A|2351
8V9L|1|A|C|2352
8V9L|1|A|U|2353
8V9L|1|A|G|2354
8V9L|1|A|U|2355
8V9L|1|A|G|2356
8V9L|1|A|A|2357
8V9L|1|A|A|2358
8V9L|1|A|G|2359
*
8V9L|1|A|U|2378
8V9L|1|A|G|2379
8V9L|1|A|G|2380
8V9L|1|A|A|2381
8V9L|1|A|G|2382
8V9L|1|A|U|2383
8V9L|1|A|C|2384
8V9L|1|A|G|2385
8V9L|1|A|U|2386
8V9L|1|A|U|2387
8V9L|1|A|G|2388
8V9L|1|A|U|2389
8V9L|1|A|U|2390
8V9L|1|A|G|2391
8V9L|1|A|A|2392
8V9L|1|A|A|2393
8V9L|1|A|A|2394
8V9L|1|A|U|2395
8V9L|1|A|A|2396
8V9L|1|A|C|2397

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain y

Transfer RNA; tRNA