IL_8VIO_010

3D structure

PDB id

8VIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

8VIO|1|A|U|370

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VIO_010 not in the Motif Atlas

Geometric match to IL_4V9F_107

Geometric discrepancy: 0.2191

The information below is about IL_4V9F_107

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

8VIO|1|A|G|369
8VIO|1|A|U|370
8VIO|1|A|G|371
*
8VIO|1|A|C|432
8VIO|1|A|C|433

Current chains

Chain A

23S ribosomal RNA

Nearby chains