IL_8VIO_012

3D structure

PDB id

8VIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

AUG*CU

Length

5 nucleotides

Bulged bases

8VIO|1|A|U|383

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VIO_012 not in the Motif Atlas

Geometric match to IL_3TZR_002

Geometric discrepancy: 0.2385

The information below is about IL_3TZR_002

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8VIO|1|A|A|382
8VIO|1|A|U|383
8VIO|1|A|G|384
*
8VIO|1|A|C|397
8VIO|1|A|U|398

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain V

50S ribosomal protein L24