IL_8VIO_040
3D structure
- PDB id
- 8VIO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.26 Å
Loop
- Sequence
- GGAAAAG*CGAUAAUGUAGCGGGGC
- Length
- 24 nucleotides
- Bulged bases
- 8VIO|1|A|U|1245, 8VIO|1|A|U|1248
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VIO_040 not in the Motif Atlas
- Homologous match to IL_5J7L_281
- Geometric discrepancy: 0.1797
- The information below is about IL_5J7L_281
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.3
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
8VIO|1|A|G|1142
8VIO|1|A|G|1143
8VIO|1|A|A|1144
8VIO|1|A|A|1145
8VIO|1|A|A|1146
8VIO|1|A|A|1147
8VIO|1|A|G|1148
*
8VIO|1|A|C|1242
8VIO|1|A|G|1243
8VIO|1|A|A|1244
8VIO|1|A|U|1245
8VIO|1|A|A|1246
8VIO|1|A|A|1247
8VIO|1|A|U|1248
8VIO|1|A|G|1249
8VIO|1|A|U|1250
8VIO|1|A|A|1251
8VIO|1|A|G|1252
8VIO|1|A|C|1253
8VIO|1|A|G|1254
8VIO|1|A|G|1255
8VIO|1|A|G|1256
8VIO|1|A|G|1257
8VIO|1|A|C|1258
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 3
- 50S Ribosomal Protein L37
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain D
- 50S ribosomal protein L3
- Chain K
- 50S Ribosomal Protein L13
- Chain N
- Large ribosomal subunit protein uL16
- Chain f
- 50S ribosomal protein L36
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