IL_8VIO_044

3D structure

PDB id

8VIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

8VIO|1|A|A|1206

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VIO_044 not in the Motif Atlas

Homologous match to IL_9DFE_043

Geometric discrepancy: 0.4027

The information below is about IL_9DFE_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VIO|1|A|G|1205
8VIO|1|A|A|1206
8VIO|1|A|G|1207
8VIO|1|A|U|1208
8VIO|1|A|G|1209
*
8VIO|1|A|C|1218
8VIO|1|A|U|1219
8VIO|1|A|C|1220

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L6

Chain J

50S ribosomal protein L11

Chain f

50S ribosomal protein L36