IL_8VIO_054

3D structure

PDB id

8VIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

AGCGGUACUAAC*GGACCUUCGUU

Length

23 nucleotides

Bulged bases

8VIO|1|A|G|1549

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VIO|1|A|A|1546
8VIO|1|A|G|1547
8VIO|1|A|C|1548
8VIO|1|A|G|1549
8VIO|1|A|G|1550
8VIO|1|A|U|1551
8VIO|1|A|A|1552
8VIO|1|A|C|1553
8VIO|1|A|U|1554
8VIO|1|A|A|1555
8VIO|1|A|A|1556
8VIO|1|A|C|1557
*
8VIO|1|A|G|1614
8VIO|1|A|G|1615
8VIO|1|A|A|1616
8VIO|1|A|C|1617
8VIO|1|A|C|1618
8VIO|1|A|U|1619
8VIO|1|A|U|1620
8VIO|1|A|C|1621
8VIO|1|A|G|1622
8VIO|1|A|U|1623
8VIO|1|A|U|1624

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain l

30S ribosomal protein S6