IL_8VIO_068
3D structure
- PDB id
- 8VIO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.26 Å
Loop
- Sequence
- GGAACUCGG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VIO_068 not in the Motif Atlas
- Geometric match to IL_4WF9_117
- Geometric discrepancy: 0.0937
- The information below is about IL_4WF9_117
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_80252.1
- Basepair signature
- cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
- Number of instances in this motif group
- 10
Unit IDs
8VIO|1|A|G|1884
8VIO|1|A|G|1885
8VIO|1|A|A|1886
8VIO|1|A|A|1887
8VIO|1|A|C|1888
8VIO|1|A|U|1889
8VIO|1|A|C|1890
8VIO|1|A|G|1891
8VIO|1|A|G|1892
*
8VIO|1|A|C|2214
8VIO|1|A|U|2215
8VIO|1|A|G|2216
8VIO|1|A|U|2217
8VIO|1|A|C|2218
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain D
- 50S ribosomal protein L3
- Chain L
- 50S ribosomal protein L14
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