IL_8VIO_070
3D structure
- PDB id
- 8VIO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.26 Å
Loop
- Sequence
- CGUAAC*GGAGAAG
- Length
- 13 nucleotides
- Bulged bases
- 8VIO|1|A|G|1917
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VIO_070 not in the Motif Atlas
- Homologous match to IL_5J7L_308
- Geometric discrepancy: 0.1004
- The information below is about IL_5J7L_308
- Detailed Annotation
- tSH-tSH-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_47346.2
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
8VIO|1|A|C|1904
8VIO|1|A|G|1905
8VIO|1|A|U|1906
8VIO|1|A|A|1907
8VIO|1|A|A|1908
8VIO|1|A|C|1909
*
8VIO|1|A|G|1914
8VIO|1|A|G|1915
8VIO|1|A|A|1916
8VIO|1|A|G|1917
8VIO|1|A|A|1918
8VIO|1|A|A|1919
8VIO|1|A|G|1920
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 1
- Conserved domain protein
- Chain C
- 50S ribosomal protein L2
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: