IL_8VIO_092

3D structure

PDB id

8VIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

GGGAGACUGUGAAG*UGGAGUCGUUGUUGAAAUACC

Length

35 nucleotides

Bulged bases

8VIO|1|A|A|2349, 8VIO|1|A|U|2355, 8VIO|1|A|U|2383, 8VIO|1|A|G|2391, 8VIO|1|A|A|2392, 8VIO|1|A|U|2395

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VIO|1|A|G|2346
8VIO|1|A|G|2347
8VIO|1|A|G|2348
8VIO|1|A|A|2349
8VIO|1|A|G|2350
8VIO|1|A|A|2351
8VIO|1|A|C|2352
8VIO|1|A|U|2353
8VIO|1|A|G|2354
8VIO|1|A|U|2355
8VIO|1|A|G|2356
8VIO|1|A|A|2357
8VIO|1|A|A|2358
8VIO|1|A|G|2359
*
8VIO|1|A|U|2378
8VIO|1|A|G|2379
8VIO|1|A|G|2380
8VIO|1|A|A|2381
8VIO|1|A|G|2382
8VIO|1|A|U|2383
8VIO|1|A|C|2384
8VIO|1|A|G|2385
8VIO|1|A|U|2386
8VIO|1|A|U|2387
8VIO|1|A|G|2388
8VIO|1|A|U|2389
8VIO|1|A|U|2390
8VIO|1|A|G|2391
8VIO|1|A|A|2392
8VIO|1|A|A|2393
8VIO|1|A|A|2394
8VIO|1|A|U|2395
8VIO|1|A|A|2396
8VIO|1|A|C|2397
8VIO|1|A|C|2398

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 5

Transfer RNA; tRNA