IL_8VIO_112

3D structure

PDB id

8VIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

UU*ACGG

Length

6 nucleotides

Bulged bases

8VIO|1|A|C|2936, 8VIO|1|A|G|2937

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VIO_112 not in the Motif Atlas

Homologous match to IL_5J7L_349

Geometric discrepancy: 0.1548

The information below is about IL_5J7L_349

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

8VIO|1|A|U|2919
8VIO|1|A|U|2920
*
8VIO|1|A|A|2935
8VIO|1|A|C|2936
8VIO|1|A|G|2937
8VIO|1|A|G|2938

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L17

Chain Q

50S ribosomal protein L19