IL_8VIO_133

3D structure

PDB id

8VIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

CUGCC*GAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VIO_133 not in the Motif Atlas

Homologous match to IL_4LFB_008

Geometric discrepancy: 0.1456

The information below is about IL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60988.1

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

8VIO|1|a|C|129
8VIO|1|a|U|130
8VIO|1|a|G|131
8VIO|1|a|C|132
8VIO|1|a|C|133
*
8VIO|1|a|G|227
8VIO|1|a|A|228
8VIO|1|a|U|229
8VIO|1|a|G|230

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain w

30S ribosomal protein S16

Chain x

30S ribosomal protein S17

Chain z

30S ribosomal protein S20