IL_8VIO_141

3D structure

PDB id

8VIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

ACAAU*AU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VIO_141 not in the Motif Atlas

Homologous match to IL_6CZR_127

Geometric discrepancy: 0.2122

The information below is about IL_6CZR_127

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.2

Basepair signature

cWW-cSH-cWS-tWH-cWW

Number of instances in this motif group

5

Unit IDs

8VIO|1|a|A|371
8VIO|1|a|C|372
8VIO|1|a|A|373
8VIO|1|a|A|374
8VIO|1|a|U|375
*
8VIO|1|a|A|389
8VIO|1|a|U|390

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain w

30S ribosomal protein S16