IL_8VIO_142

3D structure

PDB id

8VIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

UG*UGA

Length

5 nucleotides

Bulged bases

8VIO|1|a|G|388

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VIO_142 not in the Motif Atlas

Homologous match to IL_4LFB_016

Geometric discrepancy: 0.1593

The information below is about IL_4LFB_016

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

8VIO|1|a|U|375
8VIO|1|a|G|376
*
8VIO|1|a|U|387
8VIO|1|a|G|388
8VIO|1|a|A|389

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain w

30S ribosomal protein S16