IL_8VIO_143

3D structure

PDB id

8VIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

GGAUGACG*UGUAAAC

Length

15 nucleotides

Bulged bases

8VIO|1|a|U|412

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VIO_143 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.3636

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

8VIO|1|a|G|409
8VIO|1|a|G|410
8VIO|1|a|A|411
8VIO|1|a|U|412
8VIO|1|a|G|413
8VIO|1|a|A|414
8VIO|1|a|C|415
8VIO|1|a|G|416
*
8VIO|1|a|U|427
8VIO|1|a|G|428
8VIO|1|a|U|429
8VIO|1|a|A|430
8VIO|1|a|A|431
8VIO|1|a|A|432
8VIO|1|a|C|433

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain j

30S ribosomal protein S4