IL_8VIO_150
3D structure
- PDB id
- 8VIO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.26 Å
Loop
- Sequence
- CGUAG*UGAGG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VIO_150 not in the Motif Atlas
- Homologous match to IL_5J7L_027
- Geometric discrepancy: 0.1549
- The information below is about IL_5J7L_027
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.7
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 14
Unit IDs
8VIO|1|a|C|560
8VIO|1|a|G|561
8VIO|1|a|U|562
8VIO|1|a|A|563
8VIO|1|a|G|564
*
8VIO|1|a|U|737
8VIO|1|a|G|738
8VIO|1|a|A|739
8VIO|1|a|G|740
8VIO|1|a|G|741
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain n
- 30S Ribosomal Protein S8
- Chain s
- 30S ribosomal protein S12
- Chain v
- 30S Ribosomal Protein S15
- Chain x
- 30S ribosomal protein S17
Coloring options: