IL_8VIO_153
3D structure
- PDB id
- 8VIO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.26 Å
Loop
- Sequence
- UGAAAAC*GCGUG
- Length
- 12 nucleotides
- Bulged bases
- 8VIO|1|a|U|612
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VIO_153 not in the Motif Atlas
- Geometric match to IL_8C3A_433
- Geometric discrepancy: 0.3402
- The information below is about IL_8C3A_433
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_83023.1
- Basepair signature
- cWW-R-L-R-L-R-L-L-L-L
- Number of instances in this motif group
- 1
Unit IDs
8VIO|1|a|U|585
8VIO|1|a|G|586
8VIO|1|a|A|587
8VIO|1|a|A|588
8VIO|1|a|A|589
8VIO|1|a|A|590
8VIO|1|a|C|591
*
8VIO|1|a|G|609
8VIO|1|a|C|610
8VIO|1|a|G|611
8VIO|1|a|U|612
8VIO|1|a|G|613
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain j
- 30S ribosomal protein S4
- Chain n
- 30S Ribosomal Protein S8
- Chain w
- 30S ribosomal protein S16
Coloring options: