IL_8VIO_163

3D structure

PDB id

8VIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

8VIO|1|a|A|1377

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VIO_163 not in the Motif Atlas

Homologous match to IL_5J7L_039

Geometric discrepancy: 0.0999

The information below is about IL_5J7L_039

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

8VIO|1|a|G|904
8VIO|1|a|A|905
*
8VIO|1|a|U|1376
8VIO|1|a|A|1377
8VIO|1|a|C|1378

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain 1

Conserved domain protein

Chain k

30S Ribosomal Protein S5